Flygut: an atlas of the Drosophila adult midgut

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Home Overview of gut regions Anatomy Histology Transgene expression mapping Gene expression
Search expression data by gene:
Gene name CG5213
Flybase description This gene is referred to in FlyBase by the symbol Dmel\CG5213 (FBgn0038345).
Expression data along the gut
    Crop Cardia/R1 R2 R3 R4 R5 Hindgut Full gut
    Ratio gene/RPL42 -52.1866 -26.4908 -35.970262 -39.1609 -47.668193 -50.3191 -38.29091 -30.600396
    Affimetrix absolute value 2.703 2.926 3.081 3.107 3.193 2.909 3.317 3.378
    Affymetric present call in "x" number of chips 0 0 0 0 0 0 0 0
Intestinal gene expression in different physiological conditions
Ecc15: flies orally infected with Erwinia carotovora carotovora 15.
Pe: flies orally infected with Pseudomonas entomophila.
Pe gacA: flies orally infecte with Pseudomonas entomophila gacA.
For methods and description, see Buchon et al. 2009, Cell Host Microbe, and Chakrabarti et al. 2012, Cell Host Microbe.
Gene details (from Flybase) It is a protein_coding_gene from Drosophila melanogaster.
Based on sequence similarity, it is predicted to have molecular function: mRNA binding.
There is experimental evidence that it is involved in the biological process: neurogenesis.
One allele is reported.
The phenotypes of this allele are annotated with: trichogen cell; mesothoracic tergum.
It has one annotated transcript and one annotated polypeptide.
Protein features are: Nucleotide-binding, alpha-beta plait; Paraneoplastic encephalomyelitis antigen; RNA recognition motif domain.
Summary of modENCODE Temporal Expression Profile: Temporal profile ranges from a peak of moderately high expression to a trough of no expression detected.
Peak expression observed at stages throughout the pupal period, in adult male stages.
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