Flygut: an atlas of the Drosophila adult midgut

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Home Overview of gut regions Anatomy Histology Transgene expression mapping Gene expression
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Gene name bsk
Flybase description The gene basket is referred to in FlyBase by the symbol Dmel\bsk (CG5680, FBgn0000229).
Expression data along the gut
    Crop Cardia/R1 R2 R3 R4 R5 Hindgut Full gut
    Ratio gene/RPL42 1.4425 2.8299 1.551939 2.201 1.486511 1.861 1.17111 1.691162
    Affimetrix absolute value 8.919 9.105 8.81 9.511 9.32 9.456 8.77 8.969
    Affymetric present call in "x" number of chips 3 3 3 3 3 3 3 3
Intestinal gene expression in different physiological conditions
Ecc15: flies orally infected with Erwinia carotovora carotovora 15.
Pe: flies orally infected with Pseudomonas entomophila.
Pe gacA: flies orally infecte with Pseudomonas entomophila gacA.
For methods and description, see Buchon et al. 2009, Cell Host Microbe, and Chakrabarti et al. 2012, Cell Host Microbe.
Gene details (from Flybase) It is a protein_coding_gene from Drosophila melanogaster.
There is experimental evidence that it has the molecular function: protein binding; JUN kinase activity.
There is experimental evidence for 25 unique biological process terms, many of which group under: anatomical structure development; cellular component organization or biogenesis; cellular process involved in reproduction; biological regulation; response to chemical stimulus; immune response; cellular response to inorganic substance; defense response; multicellular organismal reproductive process; post-embryonic organ morphogenesis; growth; localization.
46 alleles are reported.
The phenotypes of these alleles are annotated with 23 unique terms, many of which group under: organ system subdivision; organ system; external compound sense organ; nervous system; adult segment; non-connected developing system; dorsal thoracic disc; protein complex; multi-cell-component structure; synapse; axon; peripheral nervous system; late extended germ band embryo.
It has 4 annotated transcripts and 4 annotated polypeptides.
Protein features are: JNK MAP kinase; MAP kinase, conserved site; Protein kinase, catalytic domain; Protein kinase-like domain; Serine/threonine-protein kinase domain; Serine/threonine-protein kinase, active site; Serine/threonine-protein kinase-like domain.
Summary of modENCODE Temporal Expression Profile: Temporal profile ranges from a peak of high expression to a trough of moderate expression.
Peak expression observed within 12-18 embryonic stages.