Flygut: an atlas of the Drosophila adult midgut

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Home Overview of gut regions Anatomy Histology Transgene expression mapping Gene expression
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Gene name cin
Flybase description The gene cinnamon is referred to in FlyBase by the symbol Dmel\cin (CG2945, FBgn0000316).
Expression data along the gut
    Crop Cardia/R1 R2 R3 R4 R5 Hindgut Full gut
    Ratio gene/RPL42 3.7794 3.1163 2.724264 4.7007 2.040824 2.7999 4.01505 2.931991
    Affimetrix absolute value 10.317 9.242 9.616 10.617 9.783 10.041 10.553 9.779
    Affymetric present call in "x" number of chips 3 3 3 3 3 3 3 3
Intestinal gene expression in different physiological conditions
Ecc15: flies orally infected with Erwinia carotovora carotovora 15.
Pe: flies orally infected with Pseudomonas entomophila.
Pe gacA: flies orally infecte with Pseudomonas entomophila gacA.
For methods and description, see Buchon et al. 2009, Cell Host Microbe, and Chakrabarti et al. 2012, Cell Host Microbe.
Gene details (from Flybase) It is a protein_coding_gene from Drosophila melanogaster.
Its molecular function is unknown.
Based on sequence similarity, it is predicted to be involved in the biological process: Mo-molybdopterin cofactor biosynthetic process.
40 alleles are reported.
The phenotypes of these alleles are annotated with: egg; pigment cell.
It has 2 annotated transcripts and 2 annotated polypeptides.
Protein features are: MoeA, C-terminal, domain IV; MoeA, N-terminal and linker domain; Molybdenum cofactor biosynthesis, conserved site; Molybdenum cofactor synthesis; Molybdopterin binding.
Summary of modENCODE Temporal Expression Profile: Temporal profile ranges from a peak of high expression to a trough of moderate expression.
Peak expression observed within 00-06 hour embryonic stages.
This gene is annotated by FlyBase as a dicistronic gene, meaning that some or all of its transcripts encode two or more polypeptide-coding open reading frames (ORFs) , with each ORF assigned to a different gene.
The distribution of RNA-Seq coverage data amongst the different encoded genes cannot be determined.