Flygut: an atlas of the Drosophila adult midgut

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Home Overview of gut regions Anatomy Histology Transgene expression mapping Gene expression
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Gene name cl
Flybase description The gene clot is referred to in FlyBase by the symbol Dmel\cl (CG11024, FBgn0000318).
Expression data along the gut
    Crop Cardia/R1 R2 R3 R4 R5 Hindgut Full gut
    Ratio gene/RPL42 5.3086 3.7267 5.207369 3.1533 5.624553 4.731 1.99884 4.972458
    Affimetrix absolute value 10.79 9.514 10.55 10.036 11.248 10.802 9.535 10.552
    Affymetric present call in "x" number of chips 3 3 3 3 3 3 3 3
Intestinal gene expression in different physiological conditions
Ecc15: flies orally infected with Erwinia carotovora carotovora 15.
Pe: flies orally infected with Pseudomonas entomophila.
Pe gacA: flies orally infecte with Pseudomonas entomophila gacA.
For methods and description, see Buchon et al. 2009, Cell Host Microbe, and Chakrabarti et al. 2012, Cell Host Microbe.
Gene details (from Flybase) It is a protein_coding_gene from Drosophila melanogaster.
It is reported to have molecular function: disulfide oxidoreductase activity.
There is experimental evidence that it is involved in the biological process: eye pigment biosynthetic process.
17 alleles are reported.
The phenotypes of these alleles are annotated with: Malpighian tubule; pigment cell.
It has one annotated transcript and one annotated polypeptide.
Protein features are: Protein of unknown function DUF953, thioredoxin-like; Thioredoxin-like fold.
Summary of modENCODE Temporal Expression Profile: Temporal profile ranges from a peak of very high expression to a trough of moderately high expression.
Peak expression observed within 00-06 hour embryonic stages, at stages throughout the larval period, during early pupal stages, in stages of adults of both sexes.