Flygut: an atlas of the Drosophila adult midgut

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Home Overview of gut regions Anatomy Histology Transgene expression mapping Gene expression
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Gene name stc
Flybase description The gene shuttle craft is referred to in FlyBase by the symbol Dmel\stc (CG3647, FBgn0001978).
Expression data along the gut
    Crop Cardia/R1 R2 R3 R4 R5 Hindgut Full gut
    Ratio gene/RPL42 -2.9395 -0.3241 -1.377459 -1.9896 -2.633401 -2.7832 -4.25898 -2.056472
    Affimetrix absolute value 6.927 7.627 7.718 7.417 7.371 7.115 6.556 7.262
    Affymetric present call in "x" number of chips 3 3 3 3 3 3 3 3
Intestinal gene expression in different physiological conditions
Ecc15: flies orally infected with Erwinia carotovora carotovora 15.
Pe: flies orally infected with Pseudomonas entomophila.
Pe gacA: flies orally infecte with Pseudomonas entomophila gacA.
For methods and description, see Buchon et al. 2009, Cell Host Microbe, and Chakrabarti et al. 2012, Cell Host Microbe.
Gene details (from Flybase) It is a protein_coding_gene from Drosophila melanogaster.
It is reported to have molecular function: single-stranded DNA binding.
Based on sequence similarity, it is predicted to be involved in the biological process: regulation of transcription, DNA-dependent.
14 alleles are reported.
The phenotypes of these alleles are annotated with: central nervous system; intersegmental nerve; abdominal segmental nerve.
It has 2 annotated transcripts and 2 annotated polypeptides.
Protein features are: Single-stranded nucleic acid binding R3H; Zinc finger, NF-X1-type; Zinc finger, PHD-type, conserved site; Zinc finger, RING-type.
Summary of modENCODE Temporal Expression Profile: Temporal profile ranges from a peak of high expression to a trough of moderate expression.
Peak expression observed within 00-12 hour embryonic stages, in adult female stages.