Flygut: an atlas of the Drosophila adult midgut

Mouche Logo lab lemaitre Bbcf logo

Home Overview of gut regions Anatomy Histology Transgene expression mapping Gene expression
Search expression data by gene:
Gene name swm
Flybase description The gene second mitotic wave missing is referred to in FlyBase by the symbol Dmel\swm (CG10084, FBgn0002044).
Expression data along the gut
    Crop Cardia/R1 R2 R3 R4 R5 Hindgut Full gut
    Ratio gene/RPL42 -1.6868 1.2042 -1.208536 -1.5779 -1.935835 -2.0352 -1.71884 -1.578963
    Affimetrix absolute value 7.656 7.881 7.905 7.732 7.826 7.556 7.797 7.646
    Affymetric present call in "x" number of chips 3 3 3 3 3 3 3 3
Intestinal gene expression in different physiological conditions
Ecc15: flies orally infected with Erwinia carotovora carotovora 15.
Pe: flies orally infected with Pseudomonas entomophila.
Pe gacA: flies orally infecte with Pseudomonas entomophila gacA.
For methods and description, see Buchon et al. 2009, Cell Host Microbe, and Chakrabarti et al. 2012, Cell Host Microbe.
Gene details (from Flybase) It is a protein_coding_gene from Drosophila melanogaster.
An electronic pipeline based on InterPro domains suggests that it has the molecular function: nucleotide binding; zinc ion binding; nucleic acid binding.
There is experimental evidence that it is involved in the biological process: negative regulation of smoothened signaling pathway.
24 alleles are reported.
The phenotypes of these alleles are annotated with: mesothoracic tergum; wing; wing vein; wing hair.
It has 2 annotated transcripts and 2 annotated polypeptides.
Protein features are: Nucleotide-binding, alpha-beta plait; RNA recognition motif domain; Splicing factor PWI; Zinc finger, CCCH-type.
Summary of modENCODE Temporal Expression Profile: Temporal profile ranges from a peak of high expression to a trough of moderate expression.
Peak expression observed within 00-12 hour embryonic stages, in adult female stages.
.