Flygut: an atlas of the Drosophila adult midgut

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Home Overview of gut regions Anatomy Histology Transgene expression mapping Gene expression
Search expression data by gene:
Gene name raw
Flybase description The gene raw is referred to in FlyBase by the symbol Dmel\raw (CG12437, FBgn0003209).
Expression data along the gut
    Crop Cardia/R1 R2 R3 R4 R5 Hindgut Full gut
    Ratio gene/RPL42 1.2606 2.0101 1.432457 -1.5337 -0.908002 1.3265 -0.17086 0.25085
    Affimetrix absolute value 8.741 8.611 8.666 7.81 8.176 8.945 8.692 8.188
    Affymetric present call in "x" number of chips 3 3 3 3 3 3 3 3
Intestinal gene expression in different physiological conditions
Ecc15: flies orally infected with Erwinia carotovora carotovora 15.
Pe: flies orally infected with Pseudomonas entomophila.
Pe gacA: flies orally infecte with Pseudomonas entomophila gacA.
For methods and description, see Buchon et al. 2009, Cell Host Microbe, and Chakrabarti et al. 2012, Cell Host Microbe.
Gene details (from Flybase) It is a protein_coding_gene from Drosophila melanogaster.
Its molecular function is unknown.
There is experimental evidence for 14 unique biological process terms, many of which group under: anatomical structure development; digestive tract development; gland morphogenesis; biological regulation; multicellular organismal process; programmed cell death; embryonic development via the syncytial blastoderm; embryonic hindgut morphogenesis; organ development; salivary gland morphogenesis; localization.
34 alleles are reported.
The phenotypes of these alleles are annotated with 16 unique terms, many of which group under: organ system; non-connected developing system; cuticle; multicellular structure; portion of tissue; presumptive embryonic/larval nervous system; cuticular specialization; extended germ band embryo; embryonic head; eo support cell; midgut constriction; nervous system; organ system subdivision; axon.
It has 3 annotated transcripts and 3 annotated polypeptides.
Summary of modENCODE Temporal Expression Profile: Temporal profile ranges from a peak of high expression to a trough of moderate expression.
Peak expression observed during early pupal stages.