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|Flybase description||The gene roughoid is referred to in FlyBase by the symbol Dmel\ru (CG1214, FBgn0003295).|
|Expression data along the gut||
|Intestinal gene expression in different physiological conditions||
Ecc15: flies orally infected with Erwinia carotovora carotovora 15.
Pe: flies orally infected with Pseudomonas entomophila.
Pe gacA: flies orally infecte with Pseudomonas entomophila gacA.
For methods and description, see Buchon et al. 2009, Cell Host Microbe, and Chakrabarti et al. 2012, Cell Host Microbe.
|Gene details (from Flybase)|| It is a protein_coding_gene from Drosophila melanogaster.
It is reported to have molecular function: serine-type peptidase activity.
There is experimental evidence that it is involved in the biological process: compound eye photoreceptor fate commitment; heart process; compound eye cone cell fate commitment; epithelial cell migration, open tracheal system.
19 alleles are reported.
The phenotypes of these alleles are annotated with: photoreceptor; eye; egg; cone cell; adult heart chamber; eye photoreceptor cell; wing; ommatidium; embryonic/larval ganglionic branch; pigment cell.
It has one annotated transcript and one annotated polypeptide.
Protein features are: Peptidase S54, rhomboid; Peptidase S54, rhomboid domain; Peptidase S54, rhomboid, metazoan.
Summary of modENCODE Temporal Expression Profile: Temporal profile ranges from a peak of moderate expression to a trough of extremely low expression.
Peak expression observed at stages throughout the pupal period.