Flygut: an atlas of the Drosophila adult midgut

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Home Overview of gut regions Anatomy Histology Transgene expression mapping Gene expression
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Gene name Ssdp
Flybase description The gene Sequence-specific single-stranded DNA-binding protein is referred to in FlyBase by the symbol Dmel\Ssdp (CG7187, FBgn0011481).
Expression data along the gut
    Crop Cardia/R1 R2 R3 R4 R5 Hindgut Full gut
    Ratio gene/RPL42 -11.2253 -5.0564 -8.816046 -8.7478 -15.529918 -12.3039 -6.16356 -11.691027
    Affimetrix absolute value 4.925 5.307 5.046 5.267 4.84 4.949 5.958 4.813
    Affymetric present call in "x" number of chips 3 3 2 3 2 3 3 2
Intestinal gene expression in different physiological conditions
Ecc15: flies orally infected with Erwinia carotovora carotovora 15.
Pe: flies orally infected with Pseudomonas entomophila.
Pe gacA: flies orally infecte with Pseudomonas entomophila gacA.
For methods and description, see Buchon et al. 2009, Cell Host Microbe, and Chakrabarti et al. 2012, Cell Host Microbe.
Gene details (from Flybase) It is a protein_coding_gene from Drosophila melanogaster.
Based on sequence similarity, it is predicted to have molecular function: single-stranded DNA binding.
There is experimental evidence that it is involved in the biological process: wing disc development; regulation of transcription, DNA-dependent.
25 alleles are reported.
The phenotypes of these alleles are annotated with: macrochaeta; mesothoracic tergum; wing; posterior scutellar bristle.
It has 3 annotated transcripts and 3 annotated polypeptides.
Protein features are: LisH dimerisation motif; Sequence-specific single-strand DNA-binding protein.
Summary of modENCODE Temporal Expression Profile: Temporal profile ranges from a peak of high expression to a trough of low expression.
Peak expression observed within 00-06 hour embryonic stages.