Flygut: an atlas of the Drosophila adult midgut

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Home Overview of gut regions Anatomy Histology Transgene expression mapping Gene expression
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Gene name Rpd3
Flybase description The gene Rpd3 is referred to in FlyBase by the symbol Dmel\Rpd3 (CG7471, FBgn0015805).
Expression data along the gut
    Crop Cardia/R1 R2 R3 R4 R5 Hindgut Full gut
    Ratio gene/RPL42 -4.5419 -2.7595 -4.544158 -3.858 -7.363453 -4.2575 -3.58072 -6.264941
    Affimetrix absolute value 6.232 6.161 6.0 6.443 5.936 6.476 6.715 5.671
    Affymetric present call in "x" number of chips 3 3 3 3 3 3 3 3
Intestinal gene expression in different physiological conditions
Ecc15: flies orally infected with Erwinia carotovora carotovora 15.
Pe: flies orally infected with Pseudomonas entomophila.
Pe gacA: flies orally infecte with Pseudomonas entomophila gacA.
For methods and description, see Buchon et al. 2009, Cell Host Microbe, and Chakrabarti et al. 2012, Cell Host Microbe.
Gene details (from Flybase) It is a protein_coding_gene from Drosophila melanogaster.
There is experimental evidence that it has the molecular function: protein binding; histone deacetylase activity.
There is experimental evidence for 14 unique biological process terms, many of which group under: biological regulation; cellular component organization or biogenesis; negative regulation of cellular biosynthetic process; system development; gene silencing; neuron differentiation; cellular respiration; multicellular organismal development; embryonic pattern specification; regulation of RNA metabolic process; negative regulation of biosynthetic process; determination of adult lifespan; catabolic process; neuron projection development.
36 alleles are reported.
The phenotypes of these alleles are annotated with: wing disc; macrochaeta; sex comb; mesothoracic tergum; alula; wing; ommatidium.
It has one annotated transcript and one annotated polypeptide.
Protein features are: Histone deacetylase; Histone deacetylase domain; Histone deacetylase superfamily.
Summary of modENCODE Temporal Expression Profile: Temporal profile ranges from a peak of very high expression to a trough of moderate expression.
Peak expression observed within 00-12 hour embryonic stages.