Flygut: an atlas of the Drosophila adult midgut

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Home Overview of gut regions Anatomy Histology Transgene expression mapping Gene expression
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Gene name SmD3
Flybase description The gene Small ribonucleoprotein particle protein SmD3 is referred to in FlyBase by the symbol Dmel\SmD3 (CG8427, FBgn0023167).
Expression data along the gut
    Crop Cardia/R1 R2 R3 R4 R5 Hindgut Full gut
    Ratio gene/RPL42 -5.0858 -1.3697 -1.933462 -2.0957 -2.628958 -2.0184 -4.87356 -2.323289
    Affimetrix absolute value 6.065 7.167 7.243 7.323 7.383 7.553 6.276 7.041
    Affymetric present call in "x" number of chips 3 3 3 3 3 3 3 3
Intestinal gene expression in different physiological conditions
Ecc15: flies orally infected with Erwinia carotovora carotovora 15.
Pe: flies orally infected with Pseudomonas entomophila.
Pe gacA: flies orally infecte with Pseudomonas entomophila gacA.
For methods and description, see Buchon et al. 2009, Cell Host Microbe, and Chakrabarti et al. 2012, Cell Host Microbe.
Gene details (from Flybase) It is a protein_coding_gene from Drosophila melanogaster.
Its molecular function is unknown.
There is experimental evidence that it is involved in the biological process: central nervous system development; mitosis; mitotic spindle organization; neuron differentiation; muscle organ development; lymph gland development; peripheral nervous system development.
23 alleles are reported.
The phenotypes of these alleles are annotated with 14 unique terms, many of which group under: multicellular structure; organ system; anatomical structure; imaginal precursor; thoracic segment; organ system subdivision; non-connected developing system; embryonic/larval imaginal precursor; sense organ; larval head segment.
It has one annotated transcript and one annotated polypeptide.
Protein features are: Like-Sm ribonucleoprotein (LSM) domain; Like-Sm ribonucleoprotein (LSM) domain, eukaryotic/archaea-type; Like-Sm ribonucleoprotein (LSM)-related domain.
Summary of modENCODE Temporal Expression Profile: Temporal profile ranges from a peak of very high expression to a trough of moderately high expression.
Peak expression observed within 00-12 hour embryonic stages.