Flygut: an atlas of the Drosophila adult midgut

Mouche Logo lab lemaitre Bbcf logo

Home Overview of gut regions Anatomy Histology Transgene expression mapping Gene expression
Search expression data by gene:
Gene name SoxN
Flybase description The gene SoxNeuro is referred to in FlyBase by the symbol Dmel\SoxN (CG18024, FBgn0029123).
Expression data along the gut
    Crop Cardia/R1 R2 R3 R4 R5 Hindgut Full gut
    Ratio gene/RPL42 -46.2094 -25.4524 -46.280213 -47.9898 -66.25922 -56.059 -61.22392 -46.879348
    Affimetrix absolute value 2.891 2.955 2.658 2.806 2.724 2.754 2.62 2.738
    Affymetric present call in "x" number of chips 0 0 0 0 0 0 0 0
Intestinal gene expression in different physiological conditions
Ecc15: flies orally infected with Erwinia carotovora carotovora 15.
Pe: flies orally infected with Pseudomonas entomophila.
Pe gacA: flies orally infecte with Pseudomonas entomophila gacA.
For methods and description, see Buchon et al. 2009, Cell Host Microbe, and Chakrabarti et al. 2012, Cell Host Microbe.
Gene details (from Flybase) It is a protein_coding_gene from Drosophila melanogaster.
There is experimental evidence that it has the molecular function: chromatin DNA binding; protein binding.
There is experimental evidence that it is involved in the biological process: central nervous system development; regulation of Wnt receptor signaling pathway; axon guidance; nervous system development.
16 alleles are reported.
The phenotypes of these alleles are annotated with 58 unique terms, many of which group under: ventral nerve cord primordium; portion of tissue; organ system subdivision; organ system; extended germ band embryo; embryonic/larval neuron; acellular anatomical structure; adult segment; stage 2 neuroblast; peripheral nervous system.
It has one annotated transcript and one annotated polypeptide.
Protein features are: High mobility group, HMG1/HMG2; High mobility group, superfamily.
Summary of modENCODE Temporal Expression Profile: Temporal profile ranges from a peak of high expression to a trough of very low expression.
Peak expression observed within 00-12 hour embryonic stages.