Flygut: an atlas of the Drosophila adult midgut

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Home Overview of gut regions Anatomy Histology Transgene expression mapping Gene expression
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Gene name CG5604
Flybase description This gene is referred to in FlyBase by the symbol Dmel\CG5604 (FBgn0032208).
Expression data along the gut
    Crop Cardia/R1 R2 R3 R4 R5 Hindgut Full gut
    Ratio gene/RPL42 -2.1379 1.2965 -2.292261 -0.5343 -5.634536 -2.0343 0.26188 -3.56234
    Affimetrix absolute value 7.328 7.989 7.056 8.157 6.375 7.538 8.476 6.541
    Affymetric present call in "x" number of chips 3 3 3 3 3 3 3 3
Intestinal gene expression in different physiological conditions
Ecc15: flies orally infected with Erwinia carotovora carotovora 15.
Pe: flies orally infected with Pseudomonas entomophila.
Pe gacA: flies orally infecte with Pseudomonas entomophila gacA.
For methods and description, see Buchon et al. 2009, Cell Host Microbe, and Chakrabarti et al. 2012, Cell Host Microbe.
Gene details (from Flybase) It is a protein_coding_gene from Drosophila melanogaster.
An electronic pipeline based on InterPro domains suggests that it has the molecular function: metal ion binding; ubiquitin-protein ligase activity.
An electronic pipeline based on InterPro domains suggests that it is involved in the biological process: protein ubiquitination.
3 alleles are reported.
The phenotype of these alleles is annotated with: mesothoracic tergum.
It has one annotated transcript and one annotated polypeptide.
Protein features are: Ankyrin repeat; Ankyrin repeat-containing domain; Armadillo-like helical; Armadillo-type fold; Galactose-binding domain-like; HECT; Mib-herc2; Sad1/UNC-like, C-terminal.
Summary of modENCODE Temporal Expression Profile: Temporal profile ranges from a peak of high expression to a trough of moderately high expression.
Peak expression observed at stages throughout embryogenesis, at stages throughout the pupal period, in stages of adults of both sexes.