Flygut: an atlas of the Drosophila adult midgut

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Home Overview of gut regions Anatomy Histology Transgene expression mapping Gene expression
Search expression data by gene:
Gene name trpgamma
Flybase description The gene trpĪ³ is referred to in FlyBase by the symbol Dmel\trpĪ³ (CG5996, FBgn0032593).
Expression data along the gut
    Crop Cardia/R1 R2 R3 R4 R5 Hindgut Full gut
    Ratio gene/RPL42 -21.5624 -19.9535 -25.59276 -35.11 -51.225035 -46.185 -50.12572 -30.008037
    Affimetrix absolute value 3.979 3.323 3.561 3.278 3.117 3.053 2.909 3.372
    Affymetric present call in "x" number of chips 0 0 0 0 0 0 0 0
Intestinal gene expression in different physiological conditions
Ecc15: flies orally infected with Erwinia carotovora carotovora 15.
Pe: flies orally infected with Pseudomonas entomophila.
Pe gacA: flies orally infecte with Pseudomonas entomophila gacA.
For methods and description, see Buchon et al. 2009, Cell Host Microbe, and Chakrabarti et al. 2012, Cell Host Microbe.
Gene details (from Flybase) It is a protein_coding_gene from Drosophila melanogaster.
There is experimental evidence that it has the molecular function: protein binding; cation channel activity.
Based on sequence similarity, it is predicted to be involved in the biological process: calcium ion transport; detection of light stimulus involved in visual perception.
9 alleles are reported.
No phenotypic data is available.
It has 2 annotated transcripts and 2 annotated polypeptides.
Protein features are: Ankyrin repeat; Ankyrin repeat-containing domain; Ion transport; Transient receptor potential II; Transient receptor potential channel; Transient receptor potential channel, canonical.
Summary of modENCODE Temporal Expression Profile: Temporal profile ranges from a peak of moderate expression to a trough of extremely low expression.
Peak expression observed during late pupal stages.