Flygut: an atlas of the Drosophila adult midgut

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Home Overview of gut regions Anatomy Histology Transgene expression mapping Gene expression
Search expression data by gene:
Gene name raps
Flybase description The gene rapsynoid is referred to in FlyBase by the symbol Dmel\raps (CG5692, FBgn0040080).
Expression data along the gut
    Crop Cardia/R1 R2 R3 R4 R5 Hindgut Full gut
    Ratio gene/RPL42 -3.2548 -1.904 -1.783302 -1.9729 -2.785488 -2.5051 -3.82633 -2.204459
    Affimetrix absolute value 6.707 6.7 7.35 7.424 7.31 7.263 6.649 7.115
    Affymetric present call in "x" number of chips 3 3 3 3 3 3 3 3
Intestinal gene expression in different physiological conditions
Ecc15: flies orally infected with Erwinia carotovora carotovora 15.
Pe: flies orally infected with Pseudomonas entomophila.
Pe gacA: flies orally infecte with Pseudomonas entomophila gacA.
For methods and description, see Buchon et al. 2009, Cell Host Microbe, and Chakrabarti et al. 2012, Cell Host Microbe.
Gene details (from Flybase) It is a protein_coding_gene from Drosophila melanogaster.
There is experimental evidence that it has the molecular function: protein binding.
There is experimental evidence that it is involved in the biological process: establishment of mitotic spindle orientation; neuroblast proliferation; asymmetric neuroblast division; establishment of spindle orientation; asymmetric cell division.
23 alleles are reported.
The phenotypes of these alleles are annotated with 11 unique terms, many of which group under: anatomical structure; organelle; multicellular structure; organ system subdivision; organ system; embryonic/larval neuron; intracellular organelle part; spindle; stem cell; peripheral nervous system.
It has one annotated transcript and one annotated polypeptide.
Protein features are: GoLoco motif; Tetratricopeptide TPR-1; Tetratricopeptide repeat; Tetratricopeptide repeat-containing; Tetratricopeptide-like helical.
Summary of modENCODE Temporal Expression Profile: Temporal profile ranges from a peak of high expression to a trough of moderate expression.
Peak expression observed within 00-12 hour embryonic stages.