Flygut: an atlas of the Drosophila adult midgut

Mouche Logo lab lemaitre Bbcf logo

Home Overview of gut regions Anatomy Histology Transgene expression mapping Gene expression
Search expression data by gene:
Gene name SMC1
Flybase description The gene SMC1 is referred to in FlyBase by the symbol Dmel\SMC1 (CG6057, FBgn0040283).
Expression data along the gut
    Crop Cardia/R1 R2 R3 R4 R5 Hindgut Full gut
    Ratio gene/RPL42 -6.8023 -2.9423 -4.556397 -4.4607 -7.162738 -4.9433 -3.72595 -5.971065
    Affimetrix absolute value 5.649 6.069 6.027 6.239 5.954 6.26 6.674 5.74
    Affymetric present call in "x" number of chips 3 3 3 3 3 3 3 3
Intestinal gene expression in different physiological conditions
Ecc15: flies orally infected with Erwinia carotovora carotovora 15.
Pe: flies orally infected with Pseudomonas entomophila.
Pe gacA: flies orally infecte with Pseudomonas entomophila gacA.
For methods and description, see Buchon et al. 2009, Cell Host Microbe, and Chakrabarti et al. 2012, Cell Host Microbe.
Gene details (from Flybase) It is a protein_coding_gene from Drosophila melanogaster.
Based on sequence similarity, it is predicted to have molecular function: DNA binding.
There is experimental evidence that it is involved in the biological process: dendrite morphogenesis; negative regulation of gene expression; neuron remodeling; mushroom body development.
8 alleles are reported.
The phenotypes of these alleles are annotated with: mesothoracic tergum; condensed chromosome.
It has one annotated transcript and one annotated polypeptide.
Protein features are: RecF/RecN/SMC; SMCs flexible hinge.
Summary of modENCODE Temporal Expression Profile: Temporal profile ranges from a peak of high expression to a trough of moderate expression.
Peak expression observed within 00-12 hour embryonic stages.