Flygut: an atlas of the Drosophila adult midgut

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Home Overview of gut regions Anatomy Histology Transgene expression mapping Gene expression
Search expression data by gene:
Gene name His2A:CG31618
Flybase description The gene His2A:CG31618 is referred to in FlyBase by the symbol Dmel\His2A:CG31618 (CG31618, FBgn0051618).
Expression data along the gut
    Crop Cardia/R1 R2 R3 R4 R5 Hindgut Full gut
    Ratio gene/RPL42 -16.8435 -9.0002 -8.210417 -5.534 -11.77168 -11.1894 -38.75158 -8.425867
    Affimetrix absolute value 4.336 4.459 5.145 5.945 5.203 5.09 3.28 5.167
    Affymetric present call in "x" number of chips 3 3 3 3 3 3 1 3
Intestinal gene expression in different physiological conditions
Ecc15: flies orally infected with Erwinia carotovora carotovora 15.
Pe: flies orally infected with Pseudomonas entomophila.
Pe gacA: flies orally infecte with Pseudomonas entomophila gacA.
For methods and description, see Buchon et al. 2009, Cell Host Microbe, and Chakrabarti et al. 2012, Cell Host Microbe.
Gene details (from Flybase) It is a protein_coding_gene from Drosophila melanogaster.
Based on sequence similarity, it is predicted to have molecular function: DNA binding.
Based on sequence similarity, it is predicted to be involved in the biological process: nucleosome assembly; chromatin assembly or disassembly.
4 alleles are reported.
No phenotypic data is available.
It has one annotated transcript and one annotated polypeptide.
Summary of modENCODE Temporal Expression Profile: No expression detected at any stage of development.
CAVEAT: These RNA-Seq temporal profiles depend upon RNA-Seq reads that are uniquely placed in the genome.
For this reason, genes such as histones, Stellates and many classes of RNA genes that are present in multiple exact or near exact copies in the genome, expression levels may be reported as much lower than their true values.