Flygut: an atlas of the Drosophila adult midgut

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Home Overview of gut regions Anatomy Histology Transgene expression mapping Gene expression
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Gene name Patj
Flybase description The gene Patj is referred to in FlyBase by the symbol Dmel\Patj (CG12021, FBgn0067864).
Expression data along the gut
    Crop Cardia/R1 R2 R3 R4 R5 Hindgut Full gut
    Ratio gene/RPL42 -4.1284 -1.6142 -2.866893 -3.1857 -3.945533 -3.3667 -3.92758 -3.355601
    Affimetrix absolute value 6.363 6.93 6.676 6.724 6.807 6.817 6.598 6.528
    Affymetric present call in "x" number of chips 3 3 1 2 3 3 2 3
Intestinal gene expression in different physiological conditions
Ecc15: flies orally infected with Erwinia carotovora carotovora 15.
Pe: flies orally infected with Pseudomonas entomophila.
Pe gacA: flies orally infecte with Pseudomonas entomophila gacA.
For methods and description, see Buchon et al. 2009, Cell Host Microbe, and Chakrabarti et al. 2012, Cell Host Microbe.
Gene details (from Flybase) It is a protein_coding_gene from Drosophila melanogaster.
There is experimental evidence that it has the molecular function: protein kinase C binding.
There is experimental evidence that it is involved in the biological process: adherens junction organization; morphogenesis of follicular epithelium; establishment or maintenance of polarity of follicular epithelium; establishment of planar polarity; photoreceptor cell maintenance; photoreceptor cell morphogenesis.
17 alleles are reported.
The phenotype of these alleles is annotated with: ectoderm.
It has 3 annotated transcripts and 3 annotated polypeptides.
Protein features are: L27; PDZ/DHR/GLGF.
Summary of modENCODE Temporal Expression Profile: Temporal profile ranges from a peak of high expression to a trough of moderate expression.
Peak expression observed within 00-06 hour embryonic stages.
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