Flygut: an atlas of the Drosophila adult midgut

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Home Overview of gut regions Anatomy Histology Transgene expression mapping Gene expression
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Gene name ed
Flybase description The gene echinoid is referred to in FlyBase by the symbol Dmel\ed (CG12676, FBgn0000547).
Expression data along the gut
    Crop Cardia/R1 R2 R3 R4 R5 Hindgut Full gut
    Ratio gene/RPL42 -6.6682 -5.2604 -11.753381 -15.4395 -20.221204 -15.2404 -8.80122 -12.816422
    Affimetrix absolute value 5.719 5.292 4.628 4.441 4.444 4.635 5.424 4.628
    Affymetric present call in "x" number of chips 3 0 0 0 0 0 3 0
Intestinal gene expression in different physiological conditions
Ecc15: flies orally infected with Erwinia carotovora carotovora 15.
Pe: flies orally infected with Pseudomonas entomophila.
Pe gacA: flies orally infecte with Pseudomonas entomophila gacA.
For methods and description, see Buchon et al. 2009, Cell Host Microbe, and Chakrabarti et al. 2012, Cell Host Microbe.
Gene details (from Flybase) It is a protein_coding_gene from Drosophila melanogaster.
There is experimental evidence that it has the molecular function: protein binding.
There is experimental evidence for 17 unique biological process terms, many of which group under: anatomical structure development; biological regulation; cellular component organization or biogenesis; cell adhesion; organ development; regulation of biological process; signaling; organ morphogenesis; regulation of developmental process; regulation of cellular component organization.
69 alleles are reported.
The phenotypes of these alleles are annotated with 32 unique terms, many of which group under: organ system subdivision; external compound sense organ; adult segment; peripheral nervous system; nervous system; adult mesothoracic segment; primordium; non-connected developing system; ommatidial precursor cluster; eo support cell; embryonic segment; presumptive embryonic/larval nervous system.
It has one annotated transcript and one annotated polypeptide.
Protein features are: CD80-like, immunoglobulin C2-set; Fibronectin type III domain; Fibronectin, type III; Immunoglobulin I-set; Immunoglobulin subtype; Immunoglobulin subtype 2; Immunoglobulin-like; Immunoglobulin-like fold.
Summary of modENCODE Temporal Expression Profile: Temporal profile ranges from a peak of very high expression to a trough of moderate expression.
Peak expression observed within 06-12 hour embryonic stages.
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