Flygut: an atlas of the Drosophila adult midgut

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Gene expression patterns along the Drosophila midgut

We analyzed the gut expression pattern of 210 reporter transgene lines. This table indicates for each line the transgene type, its expression pattern (+ indicates expression in the corresponding tissue), and the labeling system that has been used (crossed with UAS-nlsGFP for Gal4 transgenes, or direct visualization for GFP-trap lines).

Transgenes with midgut expression were divided in two categories: a- transgenes that are expressed in stem cells and that exhibit variability in their expression pattern (labeled as "Variable"), and b- transgenes that are expressed in enterocytes ("Stereotypic"). Transgenes that are expressed in enterocytes have been quantified. A graph showing the GFP intensity along the gut, its projection on our 3D gut model, as well as a representative image, can been accessed by clicking on the name of the line.

The expression profile of different transgenes can be simultaneously visualized and thus compared by clicking on the open boxes on the left of the table) and then on the link "compare GFP expression".

Lines can be sorted by name (sorting triangle at the top of columns) or searched by keyword (top right).

Stock Midgut patterning Foregut Hindgut M. Tubules Muscles Stocks origins Transgene type
Stereotypic Variable Crop Proventriculus
103491 - - - - - - - DGRC Gal4
103492 - - - - - - - DGRC Gal4
103493 + - - + - + - DGRC Gal4
103495 - - - - - - - DGRC Gal4
103497 - - - - - - - DGRC Gal4
103498 - + - + - - - DGRC Gal4
103514 + - - - + - - DGRC Gal4
103516 + - - + - - - DGRC Gal4
103517 - - - - - - - DGRC Gal4
103518 + - - + - - + DGRC Gal4
103519 + - + + + + - DGRC Gal4
103522 - - - + - + + DGRC Gal4
103527 - - - - - - - DGRC Gal4
103533 - + - - - - - DGRC Gal4
103536 - + - - - - - DGRC Gal4
103538 + - - - - - - DGRC Gal4
103542 - - - - - - - DGRC Gal4
103550 - - - - - - - DGRC Gal4
103551 - + - - - - - DGRC Gal4
103553 + - - + + + - DGRC Gal4
103554 - + - - - - - DGRC Gal4
103555 + - - + - - - DGRC Gal4
103574 - - - - - - - DGRC Gal4
103575 - - - - - - - DGRC Gal4
103580 - - - - - - - DGRC Gal4
103585 - + - - + - - DGRC Gal4
103589 - + - - - + - DGRC Gal4
103590 - - - - - - - DGRC Gal4
103591 - + - + - - - DGRC Gal4
103595 - - - - - - - DGRC Gal4
103596 - - - + - - - DGRC Gal4
103602 + - - - + + - DGRC Gal4
103605 - - - - - - - DGRC Gal4
103606 - - - - - - - DGRC Gal4
103608 - - - - - - - DGRC Gal4
103610 + - - - - + - DGRC Gal4
103631 - + - - - - - DGRC Gal4
103634 - - - - - - - DGRC Gal4
103635 - - - + + - - DGRC Gal4
103636 - + - + + + - DGRC Gal4
103637 + - - - - - - DGRC Gal4
103687 - - - - - - - DGRC Gal4
103746 - + - + - - - DGRC Gal4
103853 + - + + + - - DGRC Gal4
103854 - + - + - - - DGRC Gal4
103860 - - - - - - - DGRC Gal4
103863 - - - - - - + DGRC Gal4
103865 - - - - - - - DGRC Gal4
103878 + - - + - + - DGRC Gal4
103882 + - + + + - - DGRC Gal4
103900 - - - - - - - DGRC Gal4
103902 + - - + - - - DGRC Gal4
103904 + - + + + + + DGRC Gal4
103910 + - - + + + - DGRC Gal4
103922 + - - - - - - DGRC Gal4
103923 + - - - + + - DGRC Gal4
103928 - + - + - - - DGRC Gal4
103930 - + - - + - - DGRC Gal4
103943 - - - - - + - DGRC Gal4
103972 - - - - - - - DGRC Gal4
103986 + - + + - + - DGRC Gal4
103988 - + - + - - - DGRC Gal4
103989 - + - - - - - DGRC Gal4
103992 + - + + - - - DGRC Gal4
104001 - - - - - - - DGRC Gal4
104012 - - - - - - - DGRC Gal4
104028 - - - - - - - DGRC Gal4
104053 - + + - + + + DGRC Gal4
104064 + - - + - + - DGRC Gal4
104070 - + - + + - - DGRC Gal4
104130 - - - + - - - DGRC Gal4
104173 - - - - - - - DGRC Gal4
104178 + - - - - + - DGRC Gal4
104181 - - - - - - - DGRC Gal4
104184 + - - - - - - DGRC Gal4
104191 + - - - - - - DGRC Gal4
104193 - + - - - - - DGRC Gal4
104268 - - - - + + - DGRC Gal4
104274 - - - - - - - DGRC Gal4
104312 - - - - - - - DGRC Gal4
104359 - + - + - - - DGRC Gal4
104363 - + - - - - - DGRC Gal4
104429 - + - - - - - DGRC Gal4
104481 - + - - + - - DGRC Gal4
104503 - - - + + + - DGRC Gal4
104530 + - - - + + + DGRC Gal4
104563 - - - - - - - DGRC Gal4
104679 - - - - - - - DGRC Gal4
104810 - - - - - - - DGRC Gal4
104836 + - - - + - - DGRC Gal4
104876 + - - - - + - DGRC Gal4
104973 - - - - - - - DGRC Gal4
105069 + - - - - + - DGRC Gal4
105152 + - - - - - - DGRC Gal4
105156 + - + + + + - DGRC Gal4
105201 + - - + - + - DGRC Gal4
105202 + - - - - - - DGRC Gal4
105221 + - + + - + + DGRC Gal4
105259 - - - - - - - DGRC Gal4
105328 - - - - - - - DGRC Gal4
105339 + - - - - + - DGRC Gal4
105362 + - - + - + - DGRC Gal4
106143 + - - + - + - DGRC Gal4
1099 + - - - - - - Thomas Preat Gal4
110560 - - - - - - - DGRC GFP Trap
110565 + - - - - - - DGRC GFP Trap
110568 - - - - - - - DGRC GFP Trap
110570 + - - + - + - DGRC GFP Trap
110572 - - - - - - - DGRC GFP Trap
110602 - - - - - - - DGRC GFP Trap
110605 - - - - - - - DGRC GFP Trap
110611 + - - + - - - DGRC GFP Trap
110614 - - - - - - - DGRC GFP Trap
110636 + - - - + - - DGRC GFP Trap
110643 - - - - - - - DGRC GFP Trap
110647 - - - - - - - DGRC GFP Trap
110726 + - - + - - - DGRC GFP Trap
110751 - - - - - - - DGRC GFP Trap
110775 - - - - - - - DGRC GFP Trap
110777 - - - - - - - DGRC GFP Trap
110780 - - - - - - - DGRC GFP Trap
110781 + - + + + + - DGRC GFP Trap
110787 - - - - - - - DGRC GFP Trap
110796 - - - - - - - DGRC GFP Trap
112009 + - - - - - - DGRC Gal4
112041 - - - - - - - DGRC Gal4
112132 + - - - - + - DGRC Gal4
112446 + - - + - - - DGRC Gal4
112451 - + + + + + - DGRC Gal4
112462 + - - - - + - DGRC Gal4
112465 + - - + - + - DGRC Gal4
112480 - + - - - - - DGRC Gal4
112482 + - + - + + - DGRC Gal4
112486 + - - - - + - DGRC Gal4
112511 - - - - - - - DGRC Gal4
112518 + - - - - - - DGRC Gal4
112607 - - - - - - - DGRC Gal4
112663 + - + + + + - DGRC Gal4
112741 + - - + - + - DGRC Gal4
112869 - + - + + - - DGRC Gal4
112906 + - - + + + - DGRC Gal4
112920 + - - + + - - DGRC Gal4
112950 + - + + - + - DGRC Gal4
112994 + - + + - + - DGRC Gal4
113052 + - - + - + - DGRC Gal4
113094 + - - - - + - DGRC Gal4
113118 + - + + + - - DGRC Gal4
113180 + - + + - + - DGRC Gal4
113244 - + - + - - - DGRC Gal4
113269 + - - + - + - DGRC Gal4
113273 + - - + - - - DGRC Gal4
113276 + - - + + - - DGRC Gal4
113280 + - - + + + - DGRC Gal4
113303 - - - + + - - DGRC Gal4
113370 + - - - + + - DGRC Gal4
113427 - - - - - - - DGRC Gal4
113455 + - - - - - - DGRC Gal4
113498 + - - - - - - DGRC Gal4
113545 + - - + + + - DGRC Gal4
113832 + - - - + + - DGRC Gal4
113838 + - - + - + + DGRC Gal4
113846 - + - + + + - DGRC Gal4
113916 - - - - - - - DGRC Gal4
113950 + - - + - + - DGRC Gal4
114002 + - - + + - - DGRC Gal4
11527 - - - - - - - Bloomington Gal4
123608 - - - - - - - DGRC Gal4
143fkh - + + + - + + Lemaitre Gal4
30638 - - - - - - - Bloomington Gal4
33105 - - - - - - - Bloomington Gal4
3824 + - - - - + - Thomas Preat Gal4
5'Cs + - - - - + - Richards Burke Gal4
5'HR + - + + - + - Richards Burke Gal4
A144 + - - + - - - Xavier Morin GFP Trap
A152 + - - + - - - Xavier Morin GFP Trap
A153 + - - - + - - Xavier Morin GFP Trap
A165 - - - - - - - Lemaitre GFP Trap
BA00164 - - - - - - - Flytrap GFP Trap
BA00187 - - - - - - - Flytrap GFP Trap
BA00204 - - - - - - - Flytrap GFP Trap
BA00207 - - - - - - - Flytrap GFP Trap
BA00213 - - - - - - - Flytrap GFP Trap
BL23782 - - - - + - - Bloomington Gal4
BL29142 - - - - + - - Bloomington Gal4
BL29271 - - - - + - - Bloomington Gal4
CA06503 + - - - - - - Flytrap GFP Trap
CA06506 - - - - - - - Flytrap GFP Trap
CA06507 + - - + - - - Flytrap GFP Trap
CA06526 - + - + - - - Flytrap GFP Trap
CA06597 - - + + + - - Flytrap GFP Trap
CA06598 - - - - - - - Flytrap GFP Trap
CA06603 - - - + - - - Flytrap GFP Trap
CA06614 - - - - - - - Flytrap GFP Trap
CA06658 - - - - - - - Flytrap GFP Trap
CA06666 - - - - - - - Flytrap GFP Trap
CA06750 + - - + - + - Flytrap GFP Trap
Cad + - - - - - - Won-jae Lee Gal4
DmATP7 + - + + + + - J. Camakaris Gal4
FerHCH + - - - - - - F. Missirlis GFP Trap
Gradient R1
Gradient R2
Gradient R5
H167 - - - - - - - Lemaitre GFP Trap
Myo1A + - - - - - - Bloomington Gal4
NP3048 + - - - - - - Lemaitre Gal4
NPC1b + - - - - - - L. Pallanck Gal4
XB30 - - - - - - - Lemaitre GFP Trap
average pattern
btl - - - - - - - Lemaitre Gal4
c273 + - - - - + - Xavier Morin GFP Trap
c536 - - - - - - - Lemaitre GFP Trap
cg - + - + - - - Lemaitre Gal4
dFrz3RFP R. Dasgupta RFP reporter
lysC + - - - - - - Lemaitre Gal4
mex + - - - - - - M.D. Phillips and G.H. Thomas Gal4