Flygut: an atlas of the Drosophila adult midgut

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Home Overview of gut regions Anatomy Histology Transgene expression mapping Gene expression
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Gene name rut
Flybase description The gene rutabaga is referred to in FlyBase by the symbol Dmel\rut (CG9533, FBgn0003301).
Expression data along the gut
    Crop Cardia/R1 R2 R3 R4 R5 Hindgut Full gut
    Ratio gene/RPL42 -2.4356 -2.6895 -4.731779 -8.3556 -20.657231 -15.9622 -7.86933 -11.031383
    Affimetrix absolute value 7.133 6.203 5.987 5.357 4.405 4.565 5.627 4.923
    Affymetric present call in "x" number of chips 3 3 3 2 0 1 3 2
Intestinal gene expression in different physiological conditions
Ecc15: flies orally infected with Erwinia carotovora carotovora 15.
Pe: flies orally infected with Pseudomonas entomophila.
Pe gacA: flies orally infecte with Pseudomonas entomophila gacA.
For methods and description, see Buchon et al. 2009, Cell Host Microbe, and Chakrabarti et al. 2012, Cell Host Microbe.
Gene details (from Flybase) It is a protein_coding_gene from Drosophila melanogaster.
There is experimental evidence that it has the molecular function: calcium- and calmodulin-responsive adenylate cyclase activity.
There is experimental evidence for 16 unique biological process terms, many of which group under: multicellular organismal process; learning or memory; learning; synaptic transmission; memory; associative learning; response to chemical stimulus; response to stress; cell-cell signaling; cellular component organization or biogenesis; determination of adult lifespan; sleep; nucleoside monophosphate metabolic process.
32 alleles are reported.
The phenotypes of these alleles are annotated with 11 unique terms, many of which group under: organ system subdivision; nervous system; organ system; peripheral nervous system; embryonic/larval neuron; synapse; multi-cell-component structure; multicellular structure; somatic cell; sensillum.
It has 2 annotated transcripts and 2 annotated polypeptides.
Protein features are: Adenylate cyclase-like; Adenylyl cyclase class-3/4/guanylyl cyclase; Adenylyl cyclase class-3/4/guanylyl cyclase, conserved site.
Summary of modENCODE Temporal Expression Profile: Temporal profile ranges from a peak of moderate expression to a trough of low expression.
Peak expression observed within 06-24 hour embryonic stages, at stages throughout the larval period, at stages throughout the pupal period, in stages of adults of both sexes.
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