Flygut: an atlas of the Drosophila adult midgut

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Gene name ci
Flybase description The gene cubitus interruptus is referred to in FlyBase by the symbol Dmel\ci (CG2125, FBgn0004859).
Expression data along the gut
    Crop Cardia/R1 R2 R3 R4 R5 Hindgut Full gut
    Ratio gene/RPL42 -7.951 -12.7237 -22.217873 -21.405 -39.447183 -21.4797 -3.31141 -18.057673
    Affimetrix absolute value 5.43 4.058 3.739 3.968 3.488 4.147 6.863 4.076
    Affymetric present call in "x" number of chips 3 2 1 3 0 3 3 3
Intestinal gene expression in different physiological conditions
Ecc15: flies orally infected with Erwinia carotovora carotovora 15.
Pe: flies orally infected with Pseudomonas entomophila.
Pe gacA: flies orally infecte with Pseudomonas entomophila gacA.
For methods and description, see Buchon et al. 2009, Cell Host Microbe, and Chakrabarti et al. 2012, Cell Host Microbe.
Gene details (from Flybase) It is a protein_coding_gene from Drosophila melanogaster.
There is experimental evidence that it has the molecular function: protein binding; transcription regulatory region DNA binding.
There is experimental evidence for 17 unique biological process terms, many of which group under: anatomical structure development; biological regulation; multicellular organismal process; organ development; organ morphogenesis; regulation of biological process; cellular component organization or biogenesis; multicellular organismal reproductive process; regulation of cellular macromolecule biosynthetic process; cuticle pattern formation; regulation of S phase of mitotic cell cycle; embryonic pattern specification; sensory organ development; genital disc pattern formation; open tracheal system development; regulation of multicellular organismal development; multicellular organism reproduction.
196 alleles are reported.
The phenotypes of these alleles are annotated with 50 unique terms, many of which group under: organ system subdivision; adult segment; organ system; adult mesothoracic segment; external compound sense organ; primordium; sensillum; integumentary specialisation; integumentary plate; larval thorax.
It has 3 annotated transcripts and 3 annotated polypeptides.
Protein features are: Zinc finger, C2H2; Zinc finger, C2H2-like; Zinc finger, C2H2-type/integrase, DNA-binding.
Summary of modENCODE Temporal Expression Profile: Temporal profile ranges from a peak of high expression to a trough of low expression.
Peak expression observed within 00-12 hour embryonic stages.
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