Flygut: an atlas of the Drosophila adult midgut

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Home Overview of gut regions Anatomy Histology Transgene expression mapping Gene expression
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Gene name jar
Flybase description The gene jaguar is referred to in FlyBase by the symbol Dmel\jar (CG5695, FBgn0011225).
Expression data along the gut
    Crop Cardia/R1 R2 R3 R4 R5 Hindgut Full gut
    Ratio gene/RPL42 -4.9525 1.3168 -0.32665 1.1671 -1.369089 0.3245 -0.80821 -0.478129
    Affimetrix absolute value 6.101 7.999 8.186 8.601 8.319 8.552 8.061 8.073
    Affymetric present call in "x" number of chips 3 3 3 3 3 3 3 3
Intestinal gene expression in different physiological conditions
Ecc15: flies orally infected with Erwinia carotovora carotovora 15.
Pe: flies orally infected with Pseudomonas entomophila.
Pe gacA: flies orally infecte with Pseudomonas entomophila gacA.
For methods and description, see Buchon et al. 2009, Cell Host Microbe, and Chakrabarti et al. 2012, Cell Host Microbe.
Gene details (from Flybase) It is a protein_coding_gene from Drosophila melanogaster.
There is experimental evidence that it has the molecular function: actin binding; protein binding; actin filament binding; myosin VI light chain binding; calmodulin binding; microtubule binding; myosin light chain binding.
There is experimental evidence for 29 unique biological process terms, many of which group under: anatomical structure development; localization; cellular component organization or biogenesis; biological regulation; cellular process involved in reproduction; multicellular organismal reproductive process; actin filament-based process; regulation of biological process; embryonic development via the syncytial blastoderm; organelle organization.
42 alleles are reported.
The phenotypes of these alleles are annotated with 17 unique terms, many of which group under: organ system; female germline cyst; portion of tissue; cuticle; eo support cell; adult segment; somatic cell; organ system subdivision; sensillum; cuticular specialization.
It has 6 annotated transcripts and 6 annotated polypeptides.
Protein features are: IQ motif, EF-hand binding site; Myosin head, motor domain; Myosin, N-terminal, SH3-like.
Summary of modENCODE Temporal Expression Profile: Temporal profile ranges from a peak of very high expression to a trough of moderately high expression.
Peak expression observed within 00-12 hour embryonic stages.
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