Flygut: an atlas of the Drosophila adult midgut

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Gene name yps
Flybase description The gene ypsilon schachtel is referred to in FlyBase by the symbol Dmel\yps (CG5654, FBgn0022959).
Expression data along the gut
    Crop Cardia/R1 R2 R3 R4 R5 Hindgut Full gut
    Ratio gene/RPL42 1.3244 1.1586 -1.525516 0.3007 -2.392896 -1.4841 0.43729 -1.659181
    Affimetrix absolute value 8.804 7.819 7.607 8.349 7.554 8.02 8.685 7.579
    Affymetric present call in "x" number of chips 3 3 3 3 3 3 3 3
Intestinal gene expression in different physiological conditions
Ecc15: flies orally infected with Erwinia carotovora carotovora 15.
Pe: flies orally infected with Pseudomonas entomophila.
Pe gacA: flies orally infecte with Pseudomonas entomophila gacA.
For methods and description, see Buchon et al. 2009, Cell Host Microbe, and Chakrabarti et al. 2012, Cell Host Microbe.
Gene details (from Flybase) It is a protein_coding_gene from Drosophila melanogaster.
Based on sequence similarity, it is predicted to have molecular function: nucleic acid binding.
It is reported to be involved in the biological process: nuclear mRNA splicing, via spliceosome; oogenesis.
5 alleles are reported.
No phenotypic data is available.
It has 2 annotated transcripts and 2 annotated polypeptides.
Protein features are: Cold shock protein; Cold-shock conserved site; Cold-shock protein, DNA-binding; Nucleic acid-binding, OB-fold; Nucleic acid-binding, OB-fold-like.
Summary of modENCODE Temporal Expression Profile: Temporal profile ranges from a peak of very high expression to a trough of moderately high expression.
Peak expression observed within 00-18 hour embryonic stages, during early larval stages, at stages throughout the pupal period, in adult female stages.
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