Flygut: an atlas of the Drosophila adult midgut

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Gene name Aats-ala-m
Flybase description The gene mitochondrial alanyl-tRNA synthetase is referred to in FlyBase by the symbol Dmel\Aats-ala-m (CG4633, FBgn0028962).
Expression data along the gut
    Crop Cardia/R1 R2 R3 R4 R5 Hindgut Full gut
    Ratio gene/RPL42 -5.1939 -2.4554 -3.040477 -3.3175 -5.859629 -5.1142 -2.77622 -4.448702
    Affimetrix absolute value 6.063 6.332 6.579 6.658 6.22 6.213 7.085 6.11
    Affymetric present call in "x" number of chips 2 3 3 3 2 3 3 2
Intestinal gene expression in different physiological conditions
Ecc15: flies orally infected with Erwinia carotovora carotovora 15.
Pe: flies orally infected with Pseudomonas entomophila.
Pe gacA: flies orally infecte with Pseudomonas entomophila gacA.
For methods and description, see Buchon et al. 2009, Cell Host Microbe, and Chakrabarti et al. 2012, Cell Host Microbe.
Gene details (from Flybase) It is a protein_coding_gene from Drosophila melanogaster.
Based on sequence similarity, it is predicted to have molecular function: alanine-tRNA ligase activity.
Based on sequence similarity, it is predicted to be involved in the biological process: alanyl-tRNA aminoacylation.
3 alleles are reported.
The phenotype of these alleles is annotated with: trichogen cell.
It has one annotated transcript and one annotated polypeptide.
Protein features are: Alanyl-tRNA synthetase, class IIc; Alanyl-tRNA synthetase, class IIc, N-terminal; Alanyl-tRNA synthetase, class IIc, anti-codon-binding domain; Alanyl-tRNA synthetase, class IIc, core domain; Alanyl-tRNA synthetase, eukaryota/bacteria; Threonyl/alanyl tRNA synthetase, SAD; Threonyl/alanyl tRNA synthetase, class II-like, putative editing domain.
Summary of modENCODE Temporal Expression Profile: Temporal profile ranges from a peak of moderate expression to a trough of low expression.
Peak expression observed at stages throughout embryogenesis, at stages throughout the larval period, at stages throughout the pupal period, in stages of adults of both sexes.
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