Flygut: an atlas of the Drosophila adult midgut

 Mouche Logo lab lemaitre Bbcf logo
Home Overview of gut regions Anatomy Histology Transgene expression mapping Gene expression
Search expression data by gene:
Gene name gammaCop
Flybase description The gene γ-coatomer protein is referred to in FlyBase by the symbol Dmel\γCop (CG1528, FBgn0028968).
Expression data along the gut
    Crop Cardia/R1 R2 R3 R4 R5 Hindgut Full gut
    Ratio gene/RPL42 -1.3257 4.6058 2.738019 1.6771 1.384314 1.3339 1.14054 1.948137
    Affimetrix absolute value 8.008 9.81 9.624 9.126 9.215 8.966 8.723 9.172
    Affymetric present call in "x" number of chips 3 3 3 3 3 3 3 3
Intestinal gene expression in different physiological conditions
Ecc15: flies orally infected with Erwinia carotovora carotovora 15.
Pe: flies orally infected with Pseudomonas entomophila.
Pe gacA: flies orally infecte with Pseudomonas entomophila gacA.
For methods and description, see Buchon et al. 2009, Cell Host Microbe, and Chakrabarti et al. 2012, Cell Host Microbe.
Gene details (from Flybase) It is a protein_coding_gene from Drosophila melanogaster.
An electronic pipeline based on InterPro domains suggests that it has the molecular function: binding; structural molecule activity.
There is experimental evidence for 11 unique biological process terms, many of which group under: open tracheal system development; biological regulation; system development; cellular process; cellular component organization or biogenesis; localization; multicellular organismal development; regulation of tube architecture, open tracheal system; gland morphogenesis; chitin-based cuticle development.
38 alleles are reported.
The phenotypes of these alleles are annotated with: embryonic/first instar larval cuticle; embryonic/larval lateral trunk; embryonic/larval salivary gland; embryonic/larval dorsal trunk; presumptive embryonic/larval nervous system; endoplasmic reticulum; embryonic/larval dorsal branch; denticle belt.
It has 3 annotated transcripts and 3 annotated polypeptides.
Protein features are: Armadillo-like helical; Armadillo-type fold; Clathrin alpha-adaptin/coatomer adaptor, appendage, C-terminal subdomain; Clathrin/coatomer adaptor, adaptin-like, N-terminal; Clathrin/coatomer adaptor, adaptin-like, appendage, C-terminal subdomain; Clathrin/coatomer adaptor, adaptin-like, appendage, Ig-like subdomain; Coatomer, gamma subunit; Coatomer, gamma subunit , appendage; Coatomer, gamma subunit, appendage, Ig-like subdomain.
Summary of modENCODE Temporal Expression Profile: Temporal profile ranges from a peak of high expression to a trough of moderately high expression.
Peak expression observed within 00-18 hour embryonic stages, during early larval stages.
.