Flygut: an atlas of the Drosophila adult midgut

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Gene name CG5800
Flybase description This gene is referred to in FlyBase by the symbol Dmel\CG5800 (FBgn0030855).
Expression data along the gut
    Crop Cardia/R1 R2 R3 R4 R5 Hindgut Full gut
    Ratio gene/RPL42 -17.1471 -10.2904 -15.585299 -16.0373 -17.528971 -17.4373 -25.47628 -18.573952
    Affimetrix absolute value 4.314 4.31 4.333 4.419 4.666 4.558 3.921 4.057
    Affymetric present call in "x" number of chips 3 3 2 3 3 3 3 2
Intestinal gene expression in different physiological conditions
Ecc15: flies orally infected with Erwinia carotovora carotovora 15.
Pe: flies orally infected with Pseudomonas entomophila.
Pe gacA: flies orally infecte with Pseudomonas entomophila gacA.
For methods and description, see Buchon et al. 2009, Cell Host Microbe, and Chakrabarti et al. 2012, Cell Host Microbe.
Gene details (from Flybase) It is a protein_coding_gene from Drosophila melanogaster.
Based on sequence similarity, it is predicted to have molecular function: RNA helicase activity.
There is experimental evidence that it is involved in the biological process: larval somatic muscle development; neurogenesis.
2 alleles are reported.
The phenotype of these alleles is annotated with: embryonic/larval somatic muscle.
It has one annotated transcript and one annotated polypeptide.
Protein features are: DEAD-like helicase; DNA/RNA helicase, DEAD/DEAH box type, N-terminal; Helicase, C-terminal; RNA helicase, ATP-dependent, DEAD-box, conserved site; RNA helicase, DEAD-box type, Q motif.
Summary of modENCODE Temporal Expression Profile: Temporal profile ranges from a peak of moderately high expression to a trough of low expression.
Peak expression observed within 00-12 and 18-24 hour embryonic stages, during early larval stages, in adult female stages.
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