Flygut: an atlas of the Drosophila adult midgut

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Gene name CG3162
Flybase description The gene Large Subunit 2 is referred to in FlyBase by the symbol Dmel\LS2 (CG3162, FBgn0034834).
Expression data along the gut
    Created with Highcharts 6.0.3Fold change compared to full gutRegion-specific expression of CG3162 along the gutCropCardia/R1R2R3R4R5Hindgut-2-1012Highcharts.com
    Crop Cardia/R1 R2 R3 R4 R5 Hindgut Full gut
    Ratio gene/RPL42 -34.5048 -17.6095 -23.649038 -36.5381 -34.286432 -35.2976 -37.08032 -28.38213
    Affimetrix absolute value 3.301 3.499 3.643 3.207 3.661 3.431 3.338 3.449
    Affymetric present call in "x" number of chips 0 0 0 0 0 0 0 0
Intestinal gene expression in different physiological conditions
Created with Highcharts 6.0.3Fold change compared toUnchallengedFold change compared to UnchallengedExpression of CG3162 in different experimental conditionsEcc15 4hEcc15 16hPe 4hPe 16hPe gacA 4hPe gacA 16h-2-1012Highcharts.com
Ecc15: flies orally infected with Erwinia carotovora carotovora 15.
Pe: flies orally infected with Pseudomonas entomophila.
Pe gacA: flies orally infecte with Pseudomonas entomophila gacA.
For methods and description, see Buchon et al. 2009, Cell Host Microbe, and Chakrabarti et al. 2012, Cell Host Microbe.
Gene details (from Flybase) It is a protein_coding_gene from Drosophila melanogaster.
There is experimental evidence that it has the molecular function: protein binding; RNA binding.
There is experimental evidence that it is involved in the biological process: negative regulation of RNA splicing; regulation of gene silencing.
3 alleles are reported.
No phenotypic data is available.
It has one annotated transcript and one annotated polypeptide.
Protein features are: Nucleotide-binding, alpha-beta plait; RNA recognition motif domain; U2 snRNP auxilliary factor, large subunit, splicing factor.
Summary of modENCODE Temporal Expression Profile: Temporal profile ranges from a peak of moderate expression to a trough of no expression detected.
Peak expression observed in adult male stages.
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