Flygut: an atlas of the Drosophila adult midgut

 Mouche Logo lab lemaitre Bbcf logo
Home Overview of gut regions Anatomy Histology Transgene expression mapping Gene expression
Search expression data by gene:
Gene name CG16912
Flybase description This gene is referred to in FlyBase by the symbol Dmel\CG16912 (FBgn0035064).
Expression data along the gut
    Crop Cardia/R1 R2 R3 R4 R5 Hindgut Full gut
    Ratio gene/RPL42 -3.6859 -2.6935 -3.169342 -3.5687 -4.815133 -3.7709 -4.77619 -4.138482
    Affimetrix absolute value 6.53 6.195 6.523 6.56 6.495 6.648 6.298 6.232
    Affymetric present call in "x" number of chips 3 3 3 3 3 3 3 3
Intestinal gene expression in different physiological conditions
Ecc15: flies orally infected with Erwinia carotovora carotovora 15.
Pe: flies orally infected with Pseudomonas entomophila.
Pe gacA: flies orally infecte with Pseudomonas entomophila gacA.
For methods and description, see Buchon et al. 2009, Cell Host Microbe, and Chakrabarti et al. 2012, Cell Host Microbe.
Gene details (from Flybase) It is a protein_coding_gene from Drosophila melanogaster.
Based on sequence similarity, it is predicted to have molecular function: tyrosine-tRNA ligase activity.
Based on sequence similarity, it is predicted to be involved in the biological process: translation.
3 alleles are reported.
The phenotype of these alleles is annotated with: trichogen cell.
It has one annotated transcript and one annotated polypeptide.
Protein features are: Aminoacyl-tRNA synthetase, class I, conserved site; Aminoacyl-tRNA synthetase, class Ic; RNA-binding S4; Rossmann-like alpha/beta/alpha sandwich fold; Tyrosyl-tRNA synthetase; Tyrosyl-tRNA synthetase, bacterial-type; Tyrosyl-tRNA synthetase, bacterial-type, type 1.
Summary of modENCODE Temporal Expression Profile: Temporal profile ranges from a peak of moderately high expression to a trough of moderate expression.
Peak expression observed during early larval stages.
.