Flygut: an atlas of the Drosophila adult midgut

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Home Overview of gut regions Anatomy Histology Transgene expression mapping Gene expression
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Gene name Syx13
Flybase description The gene Syntaxin 13 is referred to in FlyBase by the symbol Dmel\Syx13 (CG11278, FBgn0036341).
Expression data along the gut
    Crop Cardia/R1 R2 R3 R4 R5 Hindgut Full gut
    Ratio gene/RPL42 -2.147 0.4864 0.390725 1.4682 -1.480908 -1.4845 -3.85111 -1.271294
    Affimetrix absolute value 7.309 7.815 8.255 8.93 8.193 7.998 6.631 7.904
    Affymetric present call in "x" number of chips 3 3 3 3 3 3 3 3
Intestinal gene expression in different physiological conditions
Ecc15: flies orally infected with Erwinia carotovora carotovora 15.
Pe: flies orally infected with Pseudomonas entomophila.
Pe gacA: flies orally infecte with Pseudomonas entomophila gacA.
For methods and description, see Buchon et al. 2009, Cell Host Microbe, and Chakrabarti et al. 2012, Cell Host Microbe.
Gene details (from Flybase) It is a protein_coding_gene from Drosophila melanogaster.
Based on sequence similarity, it is predicted to have molecular function: SNAP receptor activity.
There is experimental evidence that it is involved in the biological process: cytokinesis after mitosis; female meiosis; mitosis; male meiosis; cytokinesis after meiosis I.
5 alleles are reported.
The phenotypes of these alleles are annotated with 11 unique terms, many of which group under: organ system; multicellular structure; anatomical structure; ovariole; cell cycle; multi-tissue structure; cellular component organization or biogenesis; organelle; spermatozoon; sense organ; karyosome.
It has one annotated transcript and one annotated polypeptide.
Protein features are: Syntaxin, N-terminal; Syntaxin/epimorphin, conserved site; Target SNARE coiled-coil domain; t-SNARE.
Summary of modENCODE Temporal Expression Profile: Temporal profile ranges from a peak of high expression to a trough of moderate expression.
Peak expression observed within 00-06 hour embryonic stages, during late larval stages, during early pupal stages.
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