Flygut: an atlas of the Drosophila adult midgut

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Home Overview of gut regions Anatomy Histology Transgene expression mapping Gene expression
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Gene name GNBP3
Flybase description The gene Gram-negative bacteria binding protein 3 is referred to in FlyBase by the symbol Dmel\GNBP3 (CG5008, FBgn0040321).
Expression data along the gut
    Crop Cardia/R1 R2 R3 R4 R5 Hindgut Full gut
    Ratio gene/RPL42 -1.9393 -3.6928 -32.046291 -53.7816 -65.985804 -46.2773 -2.24561 -18.049593
    Affimetrix absolute value 7.454 5.748 3.183 2.64 2.745 3.043 7.419 4.081
    Affymetric present call in "x" number of chips 3 3 0 0 0 0 3 1
Intestinal gene expression in different physiological conditions
Ecc15: flies orally infected with Erwinia carotovora carotovora 15.
Pe: flies orally infected with Pseudomonas entomophila.
Pe gacA: flies orally infecte with Pseudomonas entomophila gacA.
For methods and description, see Buchon et al. 2009, Cell Host Microbe, and Chakrabarti et al. 2012, Cell Host Microbe.
Gene details (from Flybase) It is a protein_coding_gene from Drosophila melanogaster.
Based on sequence similarity, it is predicted to have molecular function: pattern recognition receptor activity.
It is reported to be involved in the biological process: response to fungus; defense response.
4 alleles are reported.
No phenotypic data is available.
It has one annotated transcript and one annotated polypeptide.
Protein features are: Concanavalin A-like lectin/glucanase; Concanavalin A-like lectin/glucanase, subgroup; Glycoside hydrolase, family 16.
Summary of modENCODE Temporal Expression Profile: Temporal profile ranges from a peak of high expression to a trough of very low expression.
Peak expression observed during late larval stages, at stages throughout the pupal period.
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