Flygut: an atlas of the Drosophila adult midgut

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Home Overview of gut regions Anatomy Histology Transgene expression mapping Gene expression
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Gene name Rim
Flybase description The gene Rim is referred to in FlyBase by the symbol Dmel\Rim (CG33547, FBgn0053547).
Expression data along the gut
    Crop Cardia/R1 R2 R3 R4 R5 Hindgut Full gut
    Ratio gene/RPL42 -19.2796 -11.4839 -14.572701 -16.7592 -19.75476 -20.2735 -18.56952 -14.819188
    Affimetrix absolute value 4.166 4.146 4.365 4.349 4.461 4.224 4.361 4.424
    Affymetric present call in "x" number of chips 0 1 0 0 1 0 0 0
Intestinal gene expression in different physiological conditions
Ecc15: flies orally infected with Erwinia carotovora carotovora 15.
Pe: flies orally infected with Pseudomonas entomophila.
Pe gacA: flies orally infecte with Pseudomonas entomophila gacA.
For methods and description, see Buchon et al. 2009, Cell Host Microbe, and Chakrabarti et al. 2012, Cell Host Microbe.
Gene details (from Flybase) It is a protein_coding_gene from Drosophila melanogaster.
Based on sequence similarity, it is predicted to have molecular function: small GTPase regulator activity.
Based on sequence similarity, it is predicted to be involved in the biological process: regulation of exocytosis; synaptic vesicle exocytosis.
9 alleles are reported.
No phenotypic data is available.
It has 14 annotated transcripts and 14 annotated polypeptides.
Protein features are: C2 calcium-dependent membrane targeting; C2 calcium/lipid-binding domain, CaLB; C2 membrane targeting protein; PDZ/DHR/GLGF; Rab-binding domain; Zinc finger, FYVE-related; Zinc finger, FYVE/PHD-type; Zinc finger, RING/FYVE/PHD-type.
Summary of modENCODE Temporal Expression Profile: Temporal profile ranges from a peak of moderate expression to a trough of extremely low expression.
Peak expression observed within 12-24 hour embryonic stages, during early larval stages, in adult male stages.
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