Flygut: an atlas of the Drosophila adult midgut

Mouche Logo lab lemaitre Bbcf logo

Home Overview of gut regions Anatomy Histology Transgene expression mapping Gene expression
Search expression data by gene:
Gene name Chd1
Flybase description The gene Chromodomain-helicase-DNA-binding protein 1 is referred to in FlyBase by the symbol Dmel\Chd1 (CG3733, FBgn0250786).
Expression data along the gut
    Crop Cardia/R1 R2 R3 R4 R5 Hindgut Full gut
    Ratio gene/RPL42 -5.9114 -2.5977 -3.666989 -3.678 -7.253518 -5.6274 -4.19888 -5.910782
    Affimetrix absolute value 5.873 6.245 6.332 6.532 5.939 6.092 6.508 5.703
    Affymetric present call in "x" number of chips 3 3 3 3 3 3 3 3
Intestinal gene expression in different physiological conditions
Ecc15: flies orally infected with Erwinia carotovora carotovora 15.
Pe: flies orally infected with Pseudomonas entomophila.
Pe gacA: flies orally infecte with Pseudomonas entomophila gacA.
For methods and description, see Buchon et al. 2009, Cell Host Microbe, and Chakrabarti et al. 2012, Cell Host Microbe.
Gene details (from Flybase) It is a protein_coding_gene from Drosophila melanogaster.
There is experimental evidence that it has the molecular function: chromatin binding.
There is experimental evidence that it is involved in the biological process: fertilization, exchange of chromosomal proteins; oogenesis; imaginal disc-derived wing morphogenesis.
15 alleles are reported.
The phenotypes of these alleles are annotated with: trichogen cell; wing; male pronucleus.
It has 2 annotated transcripts and 2 annotated polypeptides.
Protein features are: Chromo domain; Chromo domain-like; Chromo domain/shadow; DEAD-like helicase; DNA/RNA helicase, ATP-dependent, DEAH-box type, conserved site; Helicase, C-terminal; SNF2-related.
Summary of modENCODE Temporal Expression Profile: Temporal profile ranges from a peak of high expression to a trough of moderate expression.
Peak expression observed within 00-06 hour embryonic stages, in adult female stages.
.